table of contents
| CONVERTSAMPLES(1) | User Commands | CONVERTSAMPLES(1) |
NAME¶
convertSamples - convert or normalize MCMC expression samplesSYNOPSIS¶
convertSamples -a <action> -o <outFileName> [OPTIONS] [sampleFile]DESCRIPTION¶
Converts or normalizes MCMC expression samples.- [sampleFile] should contain transposed MCMC samples.
OPTIONS¶
--help
- Show this help information.
--Nmap=<Nmap>
- Total number of aligned reads. Or a normalization constant, when normalizing.
-a <action> , --action=<action>
- Action to perform options:
- T2R - theta to rpkm R2T - rpkm to theta T2RL - theta to log-rpkm C2R - counts to rpkm R2C - rpkm 2 counts NORM - normalize (samples are multiplied by Nmap) LOGNORM - log+normalize (samples are multiplied by Nmap and logged).
-o <outFileName> , --outFile=<outFileName>
- Name of the output file.
-t <trInfoFileName> , --trInfoFile=<trInfoFileName>
- File containing transcript information.
-v , --verbose
- Verbose output. (default: Off)
| December 2018 | convertSamples 0.7.5+dfsg |