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.TH "trees\-bootstrap" "1" "Feb 2018" "" ""
.hy
.SH NAME
.PP
\f[B]trees\-bootstrap\f[] \- Compare support for partitions between
different files.
.SH SYNOPSIS
.PP
\f[B]trees\-bootstrap\f[] \f[I]file1\f[] [\f[I]file2\f[] ...
] \-\-predicates \f[I]predicate file\f[] [OPTIONS]
.SH DESCRIPTION
.PP
Compare support for partitions between different files.
.SH INPUT OPTIONS:
.TP
.B \f[B]\-h\f[], \f[B]\-\-help\f[]
Produce help message.
.RS
.RE
.TP
.B \f[B]\-s\f[] \f[I]arg\f[] (=10%), \f[B]\-\-skip\f[] \f[I]arg\f[] (=10%)
Number of trees to skip.
.RS
.RE
.TP
.B \f[B]\-u\f[] \f[I]arg\f[], \f[B]\-\-until\f[] \f[I]arg\f[]
Read until this number of trees.
.RS
.RE
.TP
.B \f[B]\-m\f[] \f[I]arg\f[], \f[B]\-\-max\f[] \f[I]arg\f[]
Thin tree samples down to this number of trees.
.RS
.RE
.TP
.B \f[B]\-x\f[] \f[I]arg\f[], \f[B]\-\-subsample\f[] \f[I]arg\f[]
Factor by which to sub\-sample.
.RS
.RE
.TP
.B \f[B]\-\-predicates\f[] \f[I]arg\f[]
Predicates to examine.
.RS
.RE
.TP
.B \f[B]\-\-min\-support\f[] \f[I]arg\f[] (=0.1)
Minimum value of predicates to consider interesting..
.RS
.RE
.TP
.B \f[B]\-v\f[], \f[B]\-\-verbose\f[]
Output more log messages on stderr.
.RS
.RE
.SH BLOCK BOOTSTRAP OPTIONS:
.TP
.B \f[B]\-\-bootstrap\f[]
Do block bootstrapping to get a CI on the posterior probabilities.
.RS
.RE
.TP
.B \f[B]\-\-samples\f[] \f[I]arg\f[] (=10000)
Number of bootstrap samples.
.RS
.RE
.TP
.B \f[B]\-\-pseudocount\f[] \f[I]arg\f[] (=1)
Extra 0/1 to add to bootstrap samples.
.RS
.RE
.TP
.B \f[B]\-\-blocksize\f[] \f[I]arg\f[]
Block size to use in block boostrap.
.RS
.RE
.TP
.B \f[B]\-\-seed\f[] \f[I]arg\f[]
Random seed.
.RS
.RE
.SH REPORTING OPTIONS:
.TP
.B \f[B]\-\-separation\f[] \f[I]arg\f[] (=0)
Only report trees/partitions if they differ by this many LODs
.RS
.RE
.TP
.B \f[B]\-\-confidence\f[] \f[I]arg\f[] (=0.95)
Width of confidence intervals
.RS
.RE
.TP
.B \f[B]\-\-LOD\-table\f[] \f[I]arg\f[]
Write the partitions LOD10\[aq]s to a file.
.RS
.RE
.SH REPORTING BUGS:
.PP
BAli\-Phy online help: <http://www.bali-phy.org/docs.php>.
.PP
Please send bug reports to <bali-phy-users@googlegroups.com>.
.SH AUTHORS
Benjamin Redelings.