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.TH "tree\-mean\-lengths" "1" "Feb 2018" "" ""
.hy
.SH NAME
.PP
\f[B]tree\-mean\-lengths\f[] \- Compute the mean lengths for branches in
the given topology.
.SH SYNOPSIS
.PP
\f[B]tree\-mean\-lengths\f[] \f[I]tree\-file\f[] < in\-file
.SH DESCRIPTION
.PP
Compute the mean lengths for branches in the given topology.
.SH ALLOWED OPTIONS:
.TP
.B \f[B]\-h\f[], \f[B]\-\-help\f[]
produce help message
.RS
.RE
.TP
.B \f[B]\-\-tree\f[] \f[I]arg\f[]
tree to re\-root
.RS
.RE
.TP
.B \f[B]\-s\f[] \f[I]arg\f[] (=0), \f[B]\-\-skip\f[] \f[I]arg\f[] (=0)
number of tree samples to skip
.RS
.RE
.TP
.B \f[B]\-u\f[] \f[I]arg\f[], \f[B]\-\-until\f[] \f[I]arg\f[]
Read until this number of trees.
.RS
.RE
.TP
.B \f[B]\-\-prune\f[] \f[I]arg\f[]
Comma\-separated taxa to remove
.RS
.RE
.TP
.B \f[B]\-x\f[] \f[I]arg\f[] (=1), \f[B]\-\-subsample\f[] \f[I]arg\f[] (=1)
factor by which to subsample
.RS
.RE
.TP
.B \f[B]\-\-var\f[]
report standard deviation of branch lengths instead of mean
.RS
.RE
.TP
.B \f[B]\-\-no\-node\-lengths\f[]
ignore branches not in the specified topology
.RS
.RE
.TP
.B \f[B]\-\-safe\f[]
Don\[aq]t die if no trees match the topology
.RS
.RE
.TP
.B \f[B]\-\-drop\-partial\f[]
Remove partial branches
.RS
.RE
.TP
.B \f[B]\-\-seed\f[] \f[I]arg\f[]
random seed
.RS
.RE
.TP
.B \f[B]\-v\f[], \f[B]\-\-verbose\f[]
Output more log messages on stderr.
.RS
.RE
.SH REPORTING BUGS:
.PP
BAli\-Phy online help: <http://www.bali-phy.org/docs.php>.
.PP
Please send bug reports to <bali-phy-users@googlegroups.com>.
.SH AUTHORS
Benjamin Redelings.