.\" Automatically generated by Pandoc 2.2.1 .\" .TH "bp\-analyze" "1" "Feb 2018" "" "" .hy .SH NAME .PP \f[B]bp\-analyze\f[] \- Generate an HTML report summarizing bali\-phy runs .SH SYNOPSIS .PP \f[B]bp\-analyze\f[] [OPTIONS] \f[I]directory1\f[] [\f[I]directory2\f[] \&... ] .SH DESCRIPTION .PP Generate an HTML report summarizing bali\-phy runs. .PP The report is created at \f[B]Reports/index.html\f[]. .PP A log of all sub\-commands is created at \f[B]Reports/bp\-analyze.log\f[]. .SH ALL OPTIONS: .TP .B \f[B]\-h\f[], \f[B]\-\-help\f[] Produce help message. .RS .RE .TP .B \f[B]\-\-skip\f[]=\f[I]NUM\f[] Suppress the line of field names. .RS .RE .TP .B \f[B]\-\-subsample\f[]=\f[I]NUM\f[] The last value goes to the end of the line. .RS .RE .SH REPORTING BUGS: .PP See \f[B]Reports/bp\-analyze.log\f[] to check if any sub\-commands failed. .PP BAli\-Phy online help: . .PP Please send bug reports to . .SH AUTHORS Benjamin Redelings.