.\" Automatically generated by Pandoc 2.2.1
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.TH "alignment\-info" "1" "Feb 2018" "" ""
.hy
.SH NAME
.PP
\f[B]alignment\-info\f[] \- Show useful statistics about the alignment.
.SH SYNOPSIS
.PP
\f[B]alignment\-info\f[] \f[I]alignment\-file\f[] [\f[I]tree\-file\f[]]
[OPTIONS]
.SH DESCRIPTION
.PP
Show useful statistics about the alignment.
.SH ALLOWED OPTIONS:
.TP
.B \f[B]\-\-help\f[]
produce help message
.RS
.RE
.TP
.B \f[B]\-\-align\f[] \f[I]arg\f[]
file with sequences and initial alignment
.RS
.RE
.TP
.B \f[B]\-\-tree\f[] \f[I]arg\f[]
file with initial tree
.RS
.RE
.TP
.B \f[B]\-\-alphabet\f[] \f[I]arg\f[]
specify the alphabet: DNA, RNA, Amino\-Acids, Triplets, or Codons
.RS
.RE
.SH REPORTING BUGS:
.PP
BAli\-Phy online help: <http://www.bali-phy.org/docs.php>.
.PP
Please send bug reports to <bali-phy-users@googlegroups.com>.
.SH AUTHORS
Benjamin Redelings.