NAME¶
alignment-consensus - Construct a consensus alignment to summarize an
alignment sample.
SYNOPSIS¶
alignment-consensus [OPTIONS] < alignments-file
DESCRIPTION¶
Construct a consensus alignment to summarize an alignment sample.
ALLOWED OPTIONS:¶
- -h, --help
- produce help message
- --alphabet arg
- Specify the alphabet: DNA, RNA, Amino-Acids, Amino-Acids+stop, Triplets,
Codons, or Codons+stop.
- --seed arg
- random seed
- --skip arg (=0)
- number of tree samples to skip
- --max-alignments arg (=1000)
- maximum number of alignments to analyze
- --strict arg
- ignore events below this probability
- --cutoff arg
- ignore events below this probability
- --uncertainty arg
- file-name for AU uncertainty vs level
- --verbose
- Output more log messages on stderr.
AUTHORS¶
Benjamin Redelings.