/#test with man \-l <file>
.TH AEVOL "1" "July 2014" "aevol 4.4" "User Manual"
.SH NAME
aevol \- an in silico experimental evolution platform
.SH SYNOPSIS
.B aevol_misc_extract \-h
|
.B \-\-help
.br
.B aevol_misc_extract \-V
|
.B \-\-version
.br
.B aevol_misc_extract \fR[\fB\-r\fI GENER\fR | \fB\-p\fI POP_FILE\fR] \fR[\fB\-t\fI PHEN_FILE\fR] \fR[\fB\-s\fI SEQ_FILE\fR] \fR[\fB\-g\fI NUM_GU\fR] \fR[\fB\-b\fR]
.SH DESCRIPTION
.B Aevol
is a simulation platform that allows one to let populations of digital organisms evolve in different conditions and study experimentally the mechanisms responsible for the structuration of the genome and the transcriptome.
.TP
.B aevol_misc_extract
extracts the genotype and/or data about the phenotype of individuals in the provided population and write them into text files easy to parse with e.g. matlab.
.SH OPTIONS
.TP
.B \-h, \-\-help
print help, then exit
.TP
.B \-V, \-\-version
print version number, then exit
.HP
.B \-r
.I  GENER
.br
read generation GENER from a full aevol backup
.HP
.B \-p
.I  POP_FILE
.br
read the population saved in population file POP_FILE
.HP
.B \-t
.I  PHEN_FILE
.br
extract and save some infos about the phenotypes of the individuals to file PHEN_FILE
.HP
.B \-s
.I  SEQ_FILE
.br
extract and save the sequences of the individuals to file SEQ_FILE
.HP
.B \-g
.I  num_gu
.br
only treat this genetic unit (by default: treat all genetic units)
.HP
.B \-b
.br
only treat the best individual
.SH "SEE ALSO"
.B ae_misc_lineage, aevol_create, aevol_modify, aevol_propagate, aevol_run