NAME¶removeDup - Remove duplicated reads
USAGE¶removeDup [options] -i <input_file> -o <output_file>
-i <string> Name of input file in SAM/BAM format.
-o <string> Name of output SAM file including filtered reads. The format is
- BAM unless '-S' is specified.
- Generate the SAM format output.
- -r <int>
- Specify the duplication cutoff. All the reads mapped to a location are removed from the output if the number of reads mapped to this location is equal or higher than the cutoff. 10 by default.
-t <string> A directory storing temporary files generated by the program.
ERROR: The input file is neither a BAM file nor a SAM file.
|February 2020||removeDup 2.0.0+dfsg-1~bpo10+1|