NAME¶flattenGTF - Flatten features included in a GTF annotation and save the modified annotation to a SAF format file.
USAGE¶flattenGTF [options] -a <input_file> -o <output_file>
## Mandatory arguments:
- -a <file>
- Name of an annotation file in GTF/GFF format.
- -o <file>
- Name of output file.
## Optional arguments:
- -t <string>
- Specify feature type in a GTF annotation. 'exon' by default. Features with the specified feature type are extracted from the annotation for processing.
- -g <string>
- Specify attribute type in GTF annotation. 'gene_id' by default. This attribute type is used to group features into metafeatures.
- Merging overlapping exons into multiple non-overlapping exons but all the edges are kept.
|February 2020||flattenGTF 2.0.0+dfsg-1~bpo10+1|