other versions
- buster 1.6.3+dfsg-1
- buster-backports 2.0.0+dfsg-1~bpo10+1
- testing 2.0.1+dfsg-1
- unstable 2.0.1+dfsg-1
| FLATTENGTF(1) | User Commands | FLATTENGTF(1) |
NAME¶
flattenGTF - Flatten features included in a GTF annotation and save the modified annotation to a SAF format file.USAGE¶
flattenGTF [options] -a <input_file> -o <output_file>## Mandatory arguments:
- -a <file>
- Name of an annotation file in GTF/GFF format.
- -o <file>
- Name of output file.
## Optional arguments:
- -t <string>
- Specify feature type in a GTF annotation. 'exon' by default. Features with the specified feature type are extracted from the annotation for processing.
- -g <string>
- Specify attribute type in GTF annotation. 'gene_id' by default. This attribute type is used to group features into metafeatures.
- -C
- Merging overlapping exons into multiple non-overlapping exons but all the edges are kept.
| February 2020 | flattenGTF 2.0.0+dfsg-1~bpo10+1 |