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GT-LTRCLUSTERING(1) GenomeTools Manual GT-LTRCLUSTERING(1)

NAME

gt-ltrclustering - Cluster features of LTRs.

SYNOPSIS

gt ltrclustering [option ...] indexname [GFF3_file ...]

DESCRIPTION

-psmall [value]
specify how many percent of the smaller sequence a match needs to cover in order to cluster the two sequences of the match. (default: 0)

-plarge [value]

specify how many percent of the larger sequence a match needs to cover in order to cluster the two sequences of the match. (default: 0)

-o [filename]

redirect output to specified file (default: undefined)

-gzip [yes|no]

write gzip compressed output file (default: no)

-bzip2 [yes|no]

write bzip2 compressed output file (default: no)

-force [yes|no]

force writing to output file (default: no)

-help

display help and exit

-version

display version information and exit

REPORTING BUGS

Report bugs to https://github.com/genometools/genometools/issues.
07/29/2020 GenomeTools 1.6.1