NAME¶

DESCRIPTION¶

gff2sga.pl [options] <GFF file>

where options are:

-h|--help

Show this stuff

--db <path>

Use <path> to locate Chrom Id Storable File 'chro_idx.nstorage'

-f|--feature <feature>

Set Feature name <feature>

-s|--species <species>

Assembly <species> (i.e hg18)

-c

Generate a Centered SGA file

-u

Generate an Unoriented SGA file

-x

Generate an extended SGA file with the 6th field equal to the GFF 'feature' field, and the feature field equal to the GFF 'source'

AUTHOR¶