.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.13.
.TH GFF2SGA.PL "1" "March 2020" "gff2sga.pl 1.5.5" "User Commands"
.SH NAME
gff2sga.pl \- convert gff to sga
.SH DESCRIPTION
.IP
gff2sga.pl [options] <GFF file>
.IP
where options are:
.TP
\fB\-h\fR|\-\-help
Show this stuff
.TP
\fB\-\-db\fR <path>
Use <path> to locate Chrom Id Storable File 'chro_idx.nstorage'
.TP
\fB\-f\fR|\-\-feature <feature>
Set Feature name <feature>
.TP
\fB\-s\fR|\-\-species <species>
Assembly <species> (i.e hg18)
.TP
\fB\-c\fR
Generate a Centered SGA file
.TP
\fB\-u\fR
Generate an Unoriented SGA file
.TP
\fB\-x\fR
Generate an extended SGA file with the
6th field equal to the GFF 'feature' field,
and the feature field equal to the GFF 'source'
.SH AUTHOR
 This manpage was written by Andreas Tille for the Debian distribution and
 can be used for any other usage of the program.