.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.40.4.
.TH FILL-AA "1" "July 2011" "fill-aa 0.1.5" "User Commands"
.SH NAME
fill-aa \- fill in ancestral alleles
.SH SYNOPSIS
.B fill-aa [OPTIONS]
.SH DESCRIPTION
.IP
zcat file.vcf.gz | fill-aa \-a ancestral-alleles.fa.gz | bgzip \-c > out.vcf.gz
.SH OPTIONS
.TP
\fB\-a\fR <file.gz>
file containing acestral alleles