.TH RNR-TII "1" "March 2017" "rnr-tii 1.0" "User Commands"
.SH NAME
rnr-tii \- computes the taxonomic instability index
.SH SYNOPSIS
.B rnr\-tii
\fB\-i\fR <bootTrees> \fB\-n\fR <runId> [\-w <workingDir>] [\-h] [\-x <excludeFile>]
.SH OPTIONS
.SS OBLIGATORY
.TP
\fB\-i\fR <bootTrees>
A collection of bootstrap trees.
.TP
\fB\-n\fR <runId>
An identifier for this run.
.SS OPTIONAL
.TP
\fB\-z\fR <z>
The exponent used in the TII formula. Use small values to emphasize close relationships and vice versa. DEFAULT: 2
.TP
\fB\-w\fR <workDir>
A working directory where output files are created.
.TP
\fB\-x\fR <excludeFile>
Exclude the taxa in this file (one taxon per line) prior to computing the TII.
.TP
\fB\-h\fR
This help file.
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.