.TH RNR-LSI "1" "March 2017" "rnr-lsi 1.0" "User Commands"
.SH NAME
rnr-lsi \- computes three flavors of leaf stability index for each taxon
.SH SYNOPSIS
.B rnr\-lsi
\fB\-i\fR <bootTrees> \fB\-n\fR <runId> [\-w <workingDir>] [\-h]
.SH OPTIONS
.SS OBLIGATORY
.TP
\fB\-i\fR <bootTrees>
A collection of bootstrap trees.
.TP
\fB\-n\fR <runId>
An identifier for this run.
.SS OPTIONAL
.TP
\fB\-x\fR <excludeFile>
Prune the taxa in the file first (one taxon per line), before computing the lsi.
.TP
\fB\-w\fR <workDir>
A working directory where output files are created.
.TP
\fB\-h\fR
This help file.
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.