.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.17.
.TH CYVCF2 "1" "February 2021" "cyvcf2 0.30.4" "User Commands"
.SH NAME
cyvcf2 \- fast parsing of VCF and BCF including region-queries
.SH SYNOPSIS
.B cyvcf2
[\fI\,OPTIONS\/\fR] \fI\,<vcf_file> or -\/\fR
.SH DESCRIPTION
.IP
fast vcf parsing with cython + htslib
.SH OPTIONS
.TP
\fB\-c\fR, \fB\-\-chrom\fR TEXT
Specify what chromosome to include.
.TP
\fB\-s\fR, \fB\-\-start\fR INTEGER
Specify the start of region.
.TP
\fB\-e\fR, \fB\-\-end\fR INTEGER
Specify the end of the region.
.TP
\fB\-\-include\fR TEXT
Specify what info field to include.
.TP
\fB\-\-exclude\fR TEXT
Specify what info field to exclude.
.TP
\fB\-i\fR, \fB\-\-individual\fR TEXT
Only print genotype call for individual.
.TP
\fB\-\-no\-inds\fR
Do not print genotypes.
.TP
\fB\-\-loglevel\fR [DEBUG|INFO|WARNING|ERROR|CRITICAL]
Set the level of log output.  [default:
INFO]
.TP
\fB\-\-silent\fR
Skip printing of vcf.
.TP
\fB\-\-help\fR
Show this message and exit.