.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.44.1.
.TH PROKKA-UNIPROT_TO_FASTA_DB "1" "February 2015" "prokka-uniprot_to_fasta_db 1.11" "User Commands"
.SH NAME
prokka-uniprot_to_fasta_db \- rapid annotation of prokaryotic genomes
.SH SYNOPSIS
.B prokka-uniprot_to_fasta_db
[\fIoptions\fR] \fI<uniprot.dat>\fR
.SH DESCRIPTION
.TP
\fB\-\-help\fR
This help.
.TP
\fB\-\-verbose\fR!
Verbose output (default '0').
.TP
\fB\-\-separator\fR=\fIs\fR
Separator for gene/EC/product (default '~~~').
.TP
\fB\-\-blank\fR=\fIs\fR
Replace empty gene/EC/product with this (default '').
.TP
\fB\-\-evidence\fR=\fIi\fR
1=prot 2=mrna 3=homol 4=pred 5=unsure (default '2').
.TP
\fB\-\-fragments\fR!
Include 'DE Flags: Fragment;' entries (default '0').
.TP
\fB\-\-minlen\fR=\fIi\fR
Minimum peptide length (default '20').
.TP
\fB\-\-term\fR=\fIs\fR
Lineage must contain this term eg. 'Bacteria' (default '').
.TP
\fB\-\-hypo\fR!
Don't filter out hypothetical proteins (default '0').