.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.44.1.
.TH PROKKA-HAMAP_TO_HMM "1" "February 2015" "prokka-hamap_to_hmm 1.11" "User Commands"
.SH NAME
prokka-hamap_to_hmm \- rapid annotation of prokaryotic genomes
.SH SYNOPSIS
.B prokka-hamap_to_hmm
[\fIoptions\fR] [\fI--datadir hamap_data_subdir\fR] \fI> hamap.hmm\fR
.SH DESCRIPTION
.TP
\fB\-\-help\fR
This help.
.TP
\fB\-\-verbose\fR!
Verbose progress (default '0').
.TP
\fB\-\-datadir\fR=\fIs\fR
Path to downloaded HAMAP folder (ftp://ftp.expasy.org/databases/hamap/) (default '').
.TP
\fB\-\-sep\fR=\fIs\fR
Separator between EC/gene/product (default '~~~').
.TP
\fB\-\-blank\fR=\fIs\fR
Replace empty EC/gene/product with this (default '').