.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.44.1.
.TH PROKKA-CDD_TO_HMM "1" "February 2015" "prokka-cdd_to_hmm 1.11" "User Commands"
.SH NAME
prokka-cdd_to_hmm \- rapid annotation of prokaryotic genomes
.SH SYNOPSIS
.B prokka-cdd_to_hmm
[\fIoptions\fR]  \fI# will write LIB.aln and LIB.hmm\fR
.SH DESCRIPTION
.TP
\fB\-\-help\fR
This help.
.TP
\fB\-\-verbose\fR!
Verbose output (default '0').
.TP
\fB\-\-srcdir\fR=\fIs\fR
CDD download dir (default '/bio/data/cdd/latest/').
.TP
\fB\-\-lib\fR=\fIs\fR
Subset of CDD to create (default 'COG').
.TP
\fB\-\-force\fR!
Force overwrite of output files: LIB.aln LIB.hmm (default '0').