.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.15.
.TH SPLITSEQ.PY "1" "May 2020" "SplitSeq.py 0.6.0" "User Commands"
.SH NAME
SplitSeq.py \- Sorts, samples and splits FASTA/FASTQ sequence files
.SH DESCRIPTION
usage: SplitSeq.py [\-\-version] [\-h]  ...
.PP
Sorts, samples and splits FASTA/FASTQ sequence files
.SS "help:"
.TP
\fB\-\-version\fR
show program's version number and exit
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.SS "subcommands:"
.IP
Sequence file operation
.TP
count
Splits sequences files by number of records.
.TP
group
Splits sequences files by annotation.
.TP
sample
Randomly samples from unpaired sequences files.
.IP
samplepair
.IP
Randomly samples from paired\-end sequences files.
.TP
sort
Sorts sequences files by annotation.
.TP
select
Selects sequences from sequence files by annotation.
.SS "output files:"
.IP
part<part>
.IP
reads partitioned by count, where <part> is the partition number.
.IP
<field>\-<value>
.IP
reads partitioned by annotation <field> and <value>.
.IP
under\-<number>
.IP
reads partitioned by numeric threshold where the annotation value is
strictly less than the threshold <number>.
.IP
atleast\-<number>
.IP
reads partitioned by numeric threshold where the annotation value is
greater than or equal to the threshold <number>.
.IP
sorted
.IP
reads sorted by annotation value.
.IP
sorted\-part<part>
.IP
reads sorted by annotation value and partitioned by count, where
<part> is the partition number.
.IP
sample<i>\-n<count>
.IP
randomly sampled reads where <i> is a number specifying the sampling
instance and <count> is the number of sampled reads.
.IP
selected
.IP
reads passing selection criteria.
.SS "output annotation fields:"
.IP
None
.SH AUTHOR
 This manpage was written by Andreas Tille for the Debian distribution and
 can be used for any other usage of the program.