.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.15.
.TH PARSEHEADERS.PY "1" "May 2020" "ParseHeaders.py 0.6.0" "User Commands"
.SH NAME
ParseHeaders.py \- Parses pRESTO annotations in FASTA/FASTQ sequence headers
.SH DESCRIPTION
usage: ParseHeaders.py [\-\-version] [\-h]  ...
.PP
Parses pRESTO annotations in FASTA/FASTQ sequence headers
.SS "help:"
.TP
\fB\-\-version\fR
show program's version number and exit
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.SS "subcommands:"
.IP
Annotation operation
.TP
add
Adds field/value pairs to header annotations
.TP
collapse
Collapses header annotations with multiple entries
.TP
copy
Copies header annotation fields
.TP
delete
Deletes fields from header annotations
.TP
expand
Expands annotation fields with multiple values
.TP
merge
Merge multiple annotations fields into a single field
.TP
rename
Renames header annotation fields
.TP
table
Writes sequence headers to a table
.SS "output files:"
.IP
reheader\-pass
.IP
reads passing annotation operation and modified accordingly.
.IP
reheader\-fail
.IP
raw reads failing annotation operation.
.IP
headers
.IP
tab delimited table of the selected annotations.
.SS "output annotation fields:"
.IP
<user defined>
.IP
annotation fields specified by the \fB\-f\fR argument.
.SH AUTHOR
 This manpage was written by Andreas Tille for the Debian distribution and
 can be used for any other usage of the program.