| PIQUE-RUN(1) | User Commands | PIQUE-RUN(1) |
NAME¶
pique-run - software pipeline for performing genome wide association studies
SYNOPSIS¶
pique-run -i in_prefix [-n threads] [-o out_prefix] [-k kinship] [-c cov_file] -t transform
OPTIONS¶
Mandatory parameters:¶
-i in_prefix: input prefix for .tped .tfam and .pheno files
Optional parameters:¶
-n threads: number of threads. Defaults to 1
-o out_prefix: prefix for output files. Defaults to [input_prefix]
-k kinship: method used to calculate kinship matrix. Either 'IBS' (default) or 'BN' methods
-c cov_file: covariate file name
-t transform: phenotype transformation (BC = Box-Cox, default = none)
More information about pique-run usage can be found in the PIQUE documentation
AUTHOR¶
Tony Travis <tony.travis@abdn.ac.uk> and Alex Douglas <a.douglas@abdn.ac.uk
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.
| July 2020 | pique-run 1.0 |