.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.16.
.TH COLLAPSE_PARTIALS "1" "September 2020" "collapse_partials 0.1.0+ds" "User Commands"
.SH NAME
collapse_partials \- Collection of tools to annotate genomes using long read transcriptomics data
.SH DESCRIPTION
.SS "Usage of collapse_partials:"
.TP
\fB\-M\fR
Discard monoexonic transcripts.
.TP
\fB\-U\fR
Discard transcripts which are not oriented.
.TP
\fB\-V\fR
Print out version.
.HP
\fB\-d\fR int
.IP
Internal exon boundary tolerance. (default 5)
.HP
\fB\-e\fR int
.IP
Three prime exons boundary tolerance. (default 30)
.HP
\fB\-f\fR int
.IP
Five prime exons boundary tolerance. (default 5000)
.TP
\fB\-h\fR
Print out help message.
.HP
\fB\-prof\fR string
.IP
Write out CPU profiling information.
.HP
\fB\-t\fR int
.IP
Number of cores to use. (default 4)
.SH AUTHOR
 This manpage was written by Nilesh Patra for the Debian distribution and
 can be used for any other usage of the program.