.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.4.
.TH GENSAMPLE "1" "December 2019" "gensample 2.0.4" "User Commands"
.SH NAME
gensample \- Generates a virtual sample suitable for sequence simulation in ODIN
.SH DESCRIPTION
gensample: Generates a virtual sample suitable for sequence simulation in ODIN
This program is part of odin 2.0.4 with configuration  using_gcc debug gui(:4) standalone dl posix_threads LAPACK(acml thread\-safe) libz gsl nifti vtk dicom png gdb
.SS "Usage and options:"
.IP
Create a sample from external maps:
.TP
gensample \fB\-fr\fR <FOVread> \fB\-fp\fR <FOVphase> \fB\-fs\fR <FOVslice> \fB\-s0\fR <spin\-density> [\-t1 <T1map>] [\-t2 <T2map>] [\-pm <ppmMap>] [\-ir <inplane\-reduction>] [\-ss <single\-slice number>] [\-ft <comma\-separated\-list of frame\-rates for dymaic phantoms>]
\fB\-o\fR <Sample\-file>
.IP
Create a point\-spread function:
.IP
gensample \fB\-psf\fR \fB\-t1\fR <point T1> \fB\-t2\fR <point T2> [\-dc <DiffusionCoeff>] \fB\-o\fR <Sample\-file>
.IP
Create rectangle of uniform spin distribution about origin in all 3 spatial dimensions:
.IP
gensample \fB\-uni\fR \fB\-n\fR <size> \fB\-f\fR <FOV> [\-t1 <uniform T1>] [\-t2 <uniform T2>] \fB\-o\fR <Sample\-file>
.IP
Create an isochromat distribution:
.IP
gensample \fB\-iso\fR \fB\-n\fR <size> \fB\-df\fR <freq\-distribution\-width[kHz]> \fB\-t1\fR <point T1> \fB\-t2\fR <point T2> [\-dc <point Dcoeff>] \fB\-o\fR <Sample\-file>
.IP
Create a homogenous disk with given radius:
.IP
gensample \fB\-dsk\fR \fB\-n\fR <size> \fB\-f\fR <FOV> \fB\-R\fR <radius> [\-t1 <uniform T1>] [\-t2 <uniform T2>] [\-dc <uniform DiffusionCoeff>] \fB\-o\fR <Sample\-file>
.IP
Create coaxial cylinder:
.IP
gensample \fB\-cyl\fR \fB\-n\fR <size> \fB\-f\fR <FOV> \fB\-Xi\fR <inner\-suscept[ppm]> \fB\-Xo\fR <outer\-suscept[ppm]> \fB\-Ri\fR <inner\-radius> \fB\-Ro\fR <outer\-radius> [\-t1 <uniform T1> \fB\-t2\fR <uniform T2> \fB\-sl\fR <single\-line>] \fB\-o\fR <Sample\-file>
.SS "Other options:"
.HP
\fB\-v\fR <loglevel> or <component:loglevel> for debugging/tracing all components or a single component, respectively. Possible values for loglevel are: 0(noLog), 1(errorLog), 2(warningLog), 3(infoLog), 4(significantDebug), 5(normalDebug), 6(verboseDebug).
.HP
\fB\-h\fR, \fB\-\-help\fR, \fB\-help\fR, \fB\-\-version\fR : Print help text or version information