.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.8.
.TH MEGAHIT_CORE_POPCNT "1" "October 2019" "megahit_core_popcnt 1.2.8" "User Commands"
.SH NAME
megahit_core_popcnt \- ultra-fast and memory-efficient meta-genome assembler
.SH SYNOPSIS
.B megahit_core_popcnt
\fI\,<sub_program> \/\fR[\fI\,sub options\/\fR]
.SH DESCRIPTION
.IP
sub\-programs:
.TP
assemble
assemble from SdBG
.TP
local
local asssembly
.TP
iterate
extract iterative edges
.TP
buildlib
build read library
.TP
count
kmer counting
.TP
read2sdbg
build sdbg from reads
.TP
seq2sdbg
build sdbg from megahit contigs + edges
.TP
contig2fastg
convert MEGAHIT's k*.contigs.fa to fastg format
.TP
readstat
calculate read stats (# of reads, bases, longest, shortest, average)
.TP
filterbylen
filter contigs by length
.TP
checkcpu
check whether the run\-time CPU supports POPCNT and BMI2
.TP
checkpopcnt
check whether the run\-time CPU supports POPCNT
.TP
checkbmi2
check whether the run\-time CPU supports BMI2
.TP
dumpversion
dump version
.TP
kmax
the largest k value supported
.SH AUTHOR
This manpage was written by Shayan Doust for the Debian distribution and can be used for any other usage of the program.