.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.16.
.TH MECAT "1" "July 2020" "mecat" "User Commands"
.SH NAME
mecat \- Generate config file or assemble, trim or correct SMRT data
.SH SYNOPSIS
.B mecat
\fI\,correct|assemble|config cfg_fname\/\fR
.SH DESCRIPTION
MECAT (v2) is an ultra-fast and accurate mapping, error correcting and de novo assembly tools for single molecula sequencing (SMRT) reads.

The parameters are defined as below:
.TP
correct:
	Correct rawreads
.TP
trim:
	Trim corrected reads
.TP
assemble:
	Generate contigs
.TP
config:
	Generate default config file