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.TH "VCFSTREAMSORT" "1" "" "vcfstreamsort (vcflib)" "vcfstreamsort (VCF
transformation)"
.hy
.SH NAME
.PP
\f[B]vcfstreamsort\f[R]
.SH SYNOPSIS
.PP
\f[B]vcfstreamsort\f[R] options [vcf file]
.SH DESCRIPTION
.PP
Sorts the input (either stdin or file) using a streaming sort algorithm.
Guarantees that the positional order is correct provided out-of-order
variants are no more than 100 positions in the VCF file apart.
.SH OPTIONS
.IP
.nf
\f[C]

options:

    -h, --help             this dialog
    -w, --window N         number of sites to sort (default 10000)
    -a, --all              load all sites and then sort in memory

Type: transformation
\f[R]
.fi
.SH EXIT VALUES
.TP
.B \f[B]0\f[R]
Success
.TP
.B \f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2020 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.