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.TH "VCFCHECK" "1" "" "vcfcheck (vcflib)" "vcfcheck (VCF metrics)"
.hy
.SH NAME
.PP
\f[B]vcfcheck\f[R]
.SH SYNOPSIS
.PP
\f[B]vcfcheck\f[R] options
.SH DESCRIPTION
.PP
Validate integrity and identity of the VCF by verifying that the VCF
record\[cq]s REF matches a given reference file.
.SH OPTIONS
.IP
.nf
\f[C]

options:
    -f, --fasta-reference  FASTA reference file to use to obtain primer sequences
    -x, --exclude-failures If a record fails, don\[aq]t print it.  Otherwise do.
    -k, --keep-failures    Print if the record fails, otherwise not.
    -h, --help       Print this message.
    -v, --version    Print version.


Type: metrics
\f[R]
.fi
.SH EXIT VALUES
.TP
.B \f[B]0\f[R]
Success
.TP
.B \f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2020 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.