.\" Automatically generated by Pandoc 2.7.3
.\"
.TH "SEGMENTIHS" "1" "" "segmentIhs (vcflib)" "segmentIhs (VCF statistics)"
.hy
.SH NAME
.PP
\f[B]segmentIhs\f[R]
.SH SYNOPSIS
.PP
segmentFst -s 2 -f iHS.normalized.output.txt
.SH DESCRIPTION
.PP
Creates genomic segments (bed file) for regions with high wcFst
.SH OPTIONS
.IP
.nf
\f[C]

Output : 8 columns :                 
     1. Seqid                        
     2. Start (zero based)           
     3. End   (zero based)           
     4. Average iHS                  
     5. Average high Fst (iHS > -s)  
     6. N iHS values in segment      
     7. N high iHS values in segment 
     8. Segment length               
required: -f            -- Output from normalizeIHS     
optional: -s            -- High absolute iHS cutoff [2] 

Type: statistics


\f[R]
.fi
.SH EXIT VALUES
.TP
.B \f[B]0\f[R]
Success
.TP
.B \f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2020 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.