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.TH "NORMALIZE-IHS" "1" "" "normalize-iHS (vcflib)" "normalize-iHS (VCF genotype)"
.hy
.SH NAME
.PP
\f[B]normalize-iHS\f[R]
.SH SYNOPSIS
.PP
normalizeHS -s 0.01 -f input.txt
.SH DESCRIPTION
.PP
normalizes iHS or XP-EHH scores.
.SH OPTIONS
.IP
.nf
\f[C]




A cross-population extended haplotype homozygosity (XP-EHH) score is
directional: a positive score suggests selection is likely to have
happened in population A, whereas a negative score suggests the same
about population B. See for example
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2687721/


Output : **normalize-iHS** adds one additional column to input (normalized score).
required: -f            -- Output from iHS or XPEHH 
optional: -s            -- Max AF diff for window [0.01]

Type: genotype


\f[R]
.fi
.SH EXIT VALUES
.TP
.B \f[B]0\f[R]
Success
.TP
.B \f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2020 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.