.TH "IsoSpec::PrecalculatedMarginal" 3 "Thu Oct 15 2020" "Version 2.1.3" "IsoSpec" \" -*- nroff -*-
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.SH NAME
IsoSpec::PrecalculatedMarginal \- Precalculated \fBMarginal\fP class\&.  

.SH SYNOPSIS
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.PP
.PP
\fC#include <marginalTrek++\&.h>\fP
.PP
Inherits \fBIsoSpec::Marginal\fP\&.
.SS "Public Member Functions"

.in +1c
.ti -1c
.RI "\fBPrecalculatedMarginal\fP (\fBMarginal\fP &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000)"
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.RI "The move constructor (disowns the \fBMarginal\fP)\&. "
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.RI "\fBPrecalculatedMarginal\fP (const \fBPrecalculatedMarginal\fP &other)=delete"
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.RI "\fBPrecalculatedMarginal\fP & \fBoperator=\fP (const \fBPrecalculatedMarginal\fP &other)=delete"
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.RI "virtual \fB~PrecalculatedMarginal\fP ()"
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.RI "Destructor\&. "
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.RI "bool \fBinRange\fP (unsigned int idx) const"
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.RI "Is there a subisotopologue with a given number? "
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.RI "const double & \fBget_lProb\fP (int idx) const"
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.RI "Get the log-probability of the idx-th subisotopologue\&. "
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.RI "const double & \fBget_prob\fP (int idx) const"
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.RI "Get the probability of the idx-th subisotopologue\&. "
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.RI "const double & \fBget_mass\fP (int idx) const"
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.RI "Get the mass of the idx-th subisotopologue\&. "
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.RI "const double * \fBget_lProbs_ptr\fP () const"
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.RI "Get the table of the log-probabilities of subisotopologues\&. "
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.RI "const double * \fBget_masses_ptr\fP () const"
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.RI "Get the table of the masses of subisotopologues\&. "
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.RI "const Conf & \fBget_conf\fP (int idx) const"
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.RI "Get the counts of isotopes that define the subisotopologue\&. "
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.RI "unsigned int \fBget_no_confs\fP () const"
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.RI "Get the number of precomputed subisotopologues\&. "
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.RI "double \fBgetModeLProb\fP () const"
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.RI "Get the log-probability of the mode subisotopologue\&. "
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.SS "Protected Attributes"

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.RI "\fBpod_vector\fP< Conf > \fBconfigurations\fP"
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.RI "Conf * \fBconfs\fP"
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.RI "unsigned int \fBno_confs\fP"
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.RI "double * \fBmasses\fP"
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.RI "\fBpod_vector\fP< double > \fBlProbs\fP"
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.RI "double * \fBprobs\fP"
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.RI "\fBAllocator\fP< int > \fBallocator\fP"
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.SS "Additional Inherited Members"
.SH "Detailed Description"
.PP 
Precalculated \fBMarginal\fP class\&. 

This class serves to calculate a set of isotopologues that is defined by the minimal probability threshold\&.
.PP
This works faster than if you did not know the threshold\&. If you have no idea about the threshold, you would need to call us, to change encode the layered version of the marginal\&. 
.PP
Definition at line 244 of file marginalTrek++\&.h\&.
.SH "Constructor & Destructor Documentation"
.PP 
.SS "IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal (\fBMarginal\fP && m, double lCutOff, bool sort = \fCtrue\fP, int tabSize = \fC1000\fP, int hashSize = \fC1000\fP)"

.PP
The move constructor (disowns the \fBMarginal\fP)\&. This constructor memoizes all subisotopologues with log-probability above the provided threshold lCutOff 
.PP
\fBParameters\fP
.RS 4
\fI\fBMarginal\fP\fP An instance of the \fBMarginal\fP class this class is about to disown\&. 
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\fIlCutOff\fP The lower limit on the log-probability of the precomputed subisotopologues\&. 
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\fIsort\fP Should the subisotopologues be stored with descending probability ? 
.RE
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\fBReturns\fP
.RS 4
An instance of the \fBPrecalculatedMarginal\fP class\&. 
.RE
.PP

.PP
Definition at line 405 of file marginalTrek++\&.cpp\&.
.SH "Member Function Documentation"
.PP 
.SS "const Conf& IsoSpec::PrecalculatedMarginal::get_conf (int idx) const\fC [inline]\fP"

.PP
Get the counts of isotopes that define the subisotopologue\&. 
.PP
\fBParameters\fP
.RS 4
\fIidx\fP The number of the considered subisotopologue\&. 
.RE
.PP
\fBReturns\fP
.RS 4
The counts of isotopes that define the subisotopologue\&. 
.RE
.PP

.PP
Definition at line 322 of file marginalTrek++\&.h\&.
.SS "const double& IsoSpec::PrecalculatedMarginal::get_lProb (int idx) const\fC [inline]\fP"

.PP
Get the log-probability of the idx-th subisotopologue\&. 
.PP
\fBParameters\fP
.RS 4
\fIidx\fP The number of the considered subisotopologue\&. 
.RE
.PP
\fBReturns\fP
.RS 4
The log-probability of the idx-th subisotopologue\&. 
.RE
.PP

.PP
Definition at line 288 of file marginalTrek++\&.h\&.
.SS "const double* IsoSpec::PrecalculatedMarginal::get_lProbs_ptr () const\fC [inline]\fP"

.PP
Get the table of the log-probabilities of subisotopologues\&. 
.PP
\fBReturns\fP
.RS 4
Pointer to the first element in the table storing log-probabilities of subisotopologues\&. 
.RE
.PP

.PP
Definition at line 308 of file marginalTrek++\&.h\&.
.SS "const double& IsoSpec::PrecalculatedMarginal::get_mass (int idx) const\fC [inline]\fP"

.PP
Get the mass of the idx-th subisotopologue\&. 
.PP
\fBParameters\fP
.RS 4
\fIidx\fP The number of the considered subisotopologue\&. 
.RE
.PP
\fBReturns\fP
.RS 4
The mass of the idx-th subisotopologue\&. 
.RE
.PP

.PP
Definition at line 302 of file marginalTrek++\&.h\&.
.SS "const double* IsoSpec::PrecalculatedMarginal::get_masses_ptr () const\fC [inline]\fP"

.PP
Get the table of the masses of subisotopologues\&. 
.PP
\fBReturns\fP
.RS 4
Pointer to the first element in the table storing masses of subisotopologues\&. 
.RE
.PP

.PP
Definition at line 314 of file marginalTrek++\&.h\&.
.SS "unsigned int IsoSpec::PrecalculatedMarginal::get_no_confs () const\fC [inline]\fP"

.PP
Get the number of precomputed subisotopologues\&. 
.PP
\fBReturns\fP
.RS 4
The number of precomputed subisotopologues\&. 
.RE
.PP

.PP
Definition at line 328 of file marginalTrek++\&.h\&.
.SS "const double& IsoSpec::PrecalculatedMarginal::get_prob (int idx) const\fC [inline]\fP"

.PP
Get the probability of the idx-th subisotopologue\&. 
.PP
\fBParameters\fP
.RS 4
\fIidx\fP The number of the considered subisotopologue\&. 
.RE
.PP
\fBReturns\fP
.RS 4
The probability of the idx-th subisotopologue\&. 
.RE
.PP

.PP
Definition at line 295 of file marginalTrek++\&.h\&.
.SS "double IsoSpec::PrecalculatedMarginal::getModeLProb () const\fC [inline]\fP"

.PP
Get the log-probability of the mode subisotopologue\&. 
.PP
\fBReturns\fP
.RS 4
The log-probability of a/the most probable subisotopologue\&. 
.RE
.PP

.PP
Definition at line 334 of file marginalTrek++\&.h\&.
.SS "bool IsoSpec::PrecalculatedMarginal::inRange (unsigned int idx) const\fC [inline]\fP"

.PP
Is there a subisotopologue with a given number? 
.PP
\fBReturns\fP
.RS 4
Returns true if idx does not exceed the number of pre-computed configurations\&. 
.RE
.PP

.PP
Definition at line 281 of file marginalTrek++\&.h\&.

.SH "Author"
.PP 
Generated automatically by Doxygen for IsoSpec from the source code\&.