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.\" ========================================================================
.\"
.IX Title "GO::Model::Seq 3pm"
.TH GO::Model::Seq 3pm "2021-01-09" "perl v5.32.0" "User Contributed Perl Documentation"
.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
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.SH "NAME"
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\&  GO::Model::Seq \- biological sequence
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.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
.Vb 1
\&    print $gene_product\->seq\->seq;
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.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
represents a biological sequence; uses the bioperl Bio::PrimarySeq class
.PP
any call that you can do on a bioperl sequence object, you can do
here, with the addition of the calls below
.PP
to get bioperl, see http://www.bioperl.org
.SS "pseq"
.IX Subsection "pseq"
.Vb 3
\&  Usage   \-
\&  Returns \- Bio::PrimarySeq
\&  Args    \-
.Ve
.SS "md5checksum"
.IX Subsection "md5checksum"
.Vb 3
\&  Usage   \- my $md5 = $seq\->md5checksum() OR $seq\->md5checksum($md5)
\&  Returns \- 32 char hex string
\&  Args    \- 32 char hex string [optional]
.Ve
.PP
checksum for seq \- easy way to check if it has been changed etc
.PP
(requires Digest::MD5 module from \s-1CPAN\s0)
.SS "to_fasta"
.IX Subsection "to_fasta"
.Vb 3
\&  Usage   \-
\&  Returns \-
\&  Args    \-
.Ve
.SS "add_xref"
.IX Subsection "add_xref"
.Vb 2
\&  \- Usage : $term\->add_xref($xref);
\&  \- Args  : GO::Term::Xref
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