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.\" ========================================================================
.\"
.IX Title "Bio::Tools::Blat 3pm"
.TH Bio::Tools::Blat 3pm "2020-10-28" "perl v5.30.3" "User Contributed Perl Documentation"
.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
.\" way too many mistakes in technical documents.
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.SH "NAME"
Bio::Tools::Blat \- parser for Blat program
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
.Vb 5
\&  use Bio::Tools::Blat;
\&  my $blat_parser = Bio::Tools::Blat\->new(\-fh =>$filehandle );
\&  while( my $blat_feat = $blat_parser\->next_result ) {
\&        push @blat_feat, $blat_feat;
\&  }
.Ve
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
.Vb 1
\& Parser for Blat program
.Ve
.SH "FEEDBACK"
.IX Header "FEEDBACK"
.SS "Mailing Lists"
.IX Subsection "Mailing Lists"
.Vb 3
\& User feedback is an integral part of the evolution of this and other
\& Bioperl modules. Send your comments and suggestions preferably to
\& the Bioperl mailing list.  Your participation is much appreciated.
\&
\&  bioperl\-l@bioperl.org                  \- General discussion
\&  http://bioperl.org/wiki/Mailing_lists  \- About the mailing lists
.Ve
.SS "Support"
.IX Subsection "Support"
Please direct usage questions or support issues to the mailing list:
.PP
\&\fIbioperl\-l@bioperl.org\fR
.PP
rather than to the module maintainer directly. Many experienced and 
reponsive experts will be able look at the problem and quickly 
address it. Please include a thorough description of the problem 
with code and data examples if at all possible.
.SS "Reporting Bugs"
.IX Subsection "Reporting Bugs"
.Vb 3
\& Report bugs to the Bioperl bug tracking system to help us keep track
\& of the bugs and their resolution. Bug reports can be submitted the
\& web:
\&
\&  https://github.com/bioperl/bioperl\-live/issues
.Ve
.SH "AUTHOR \- Balamurugan Kumarasamy"
.IX Header "AUTHOR - Balamurugan Kumarasamy"
.Vb 1
\& Email: bala@tll.org.sg
.Ve
.SH "APPENDIX"
.IX Header "APPENDIX"
.Vb 2
\& The rest of the documentation details each of the object methods.
\& Internal methods are usually preceded with a _
.Ve
.SS "new"
.IX Subsection "new"
.Vb 6
\& Title   : new
\& Usage   : my $obj = Bio::Tools::Blat\->new(\-fh=>$filehandle);
\& Function: Builds a new Bio::Tools::Blat object
\& Returns : Bio::Tools::Blat
\& Args    : \-filename
\&           \-fh (filehandle)
.Ve
.SS "next_result"
.IX Subsection "next_result"
.Vb 5
\& Title   : next_result
\& Usage   : my $feat = $blat_parser\->next_result
\& Function: Get the next result set from parser data
\& Returns : L<Bio::SeqFeature::Generic>
\& Args    : none
.Ve
.SS "create_feature"
.IX Subsection "create_feature"
.Vb 5
\& Title   : create_feature
\& Usage   : my $feat=$blat_parser\->create_feature($feature,$seqname)
\& Function: creates a SeqFeature Generic object
\& Returns : L<Bio::SeqFeature::Generic>
\& Args    :
.Ve