.\" Automatically generated by Pod::Man 4.11 (Pod::Simple 3.35) .\" .\" Standard preamble: .\" ======================================================================== .de Sp \" Vertical space (when we can't use .PP) .if t .sp .5v .if n .sp .. .de Vb \" Begin verbatim text .ft CW .nf .ne \\$1 .. .de Ve \" End verbatim text .ft R .fi .. .\" Set up some character translations and predefined strings. \*(-- will .\" give an unbreakable dash, \*(PI will give pi, \*(L" will give a left .\" double quote, and \*(R" will give a right double quote. \*(C+ will .\" give a nicer C++. Capital omega is used to do unbreakable dashes and .\" therefore won't be available. \*(C` and \*(C' expand to `' in nroff, .\" nothing in troff, for use with C<>. .tr \(*W- .ds C+ C\v'-.1v'\h'-1p'\s-2+\h'-1p'+\s0\v'.1v'\h'-1p' .ie n \{\ . ds -- \(*W- . ds PI pi . if (\n(.H=4u)&(1m=24u) .ds -- \(*W\h'-12u'\(*W\h'-12u'-\" diablo 10 pitch . if (\n(.H=4u)&(1m=20u) .ds -- \(*W\h'-12u'\(*W\h'-8u'-\" diablo 12 pitch . ds L" "" . ds R" "" . ds C` "" . ds C' "" 'br\} .el\{\ . ds -- \|\(em\| . ds PI \(*p . ds L" `` . ds R" '' . ds C` . ds C' 'br\} .\" .\" Escape single quotes in literal strings from groff's Unicode transform. .ie \n(.g .ds Aq \(aq .el .ds Aq ' .\" .\" If the F register is >0, we'll generate index entries on stderr for .\" titles (.TH), headers (.SH), subsections (.SS), items (.Ip), and index .\" entries marked with X<> in POD. Of course, you'll have to process the .\" output yourself in some meaningful fashion. .\" .\" Avoid warning from groff about undefined register 'F'. .de IX .. .nr rF 0 .if \n(.g .if rF .nr rF 1 .if (\n(rF:(\n(.g==0)) \{\ . if \nF \{\ . de IX . tm Index:\\$1\t\\n%\t"\\$2" .. . if !\nF==2 \{\ . nr % 0 . nr F 2 . \} . \} .\} .rr rF .\" ======================================================================== .\" .IX Title "Bio::Search::DatabaseI 3pm" .TH Bio::Search::DatabaseI 3pm "2020-10-28" "perl v5.30.3" "User Contributed Perl Documentation" .\" For nroff, turn off justification. Always turn off hyphenation; it makes .\" way too many mistakes in technical documents. .if n .ad l .nh .SH "NAME" Bio::Search::DatabaseI \- Interface for a database used in a sequence search .SH "SYNOPSIS" .IX Header "SYNOPSIS" Bio::Search::DatabaseI objects should not be instantiated since this module defines a pure interface. .PP Given an object that implements the Bio::Search::DatabaseI interface, you can do the following things with it: .PP .Vb 1 \& $name = $db\->name(); \& \& $date = $db\->date(); \& \& $num_letters = $db\->letters(); \& \& $num_entries = $db\->entries(); .Ve .SH "DESCRIPTION" .IX Header "DESCRIPTION" This module defines methods for an object that provides metadata information about a database used for sequence searching. .SH "FEEDBACK" .IX Header "FEEDBACK" .SS "Mailing Lists" .IX Subsection "Mailing Lists" User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. .PP .Vb 2 \& bioperl\-l@bioperl.org \- General discussion \& http://bioperl.org/wiki/Mailing_lists \- About the mailing lists .Ve .SS "Support" .IX Subsection "Support" Please direct usage questions or support issues to the mailing list: .PP \&\fIbioperl\-l@bioperl.org\fR .PP rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. .SS "Reporting Bugs" .IX Subsection "Reporting Bugs" Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web: .PP .Vb 1 \& https://github.com/bioperl/bioperl\-live/issues .Ve .SH "AUTHOR" .IX Header "AUTHOR" Steve Chervitz .PP See the \s-1FEEDBACK\s0 section for where to send bug reports and comments. .SH "COPYRIGHT" .IX Header "COPYRIGHT" Copyright (c) 2001 Steve Chervitz. All Rights Reserved. .SH "DISCLAIMER" .IX Header "DISCLAIMER" This software is provided \*(L"as is\*(R" without warranty of any kind. .SH "APPENDIX" .IX Header "APPENDIX" The rest of the documentation details each of the object methods. .SS "name" .IX Subsection "name" .Vb 4 \& Usage : $name = $db\->name(); \& Purpose : Get the name of the database searched. \& Returns : String \& Argument : n/a .Ve .SS "date" .IX Subsection "date" .Vb 4 \& Usage : $date = $db\->date(); \& Purpose : Get the creation date of the queried database. \& Returns : String \& Argument : n/a .Ve .SS "letters" .IX Subsection "letters" .Vb 4 \& Usage : $num_letters = $db\->letters(); \& Purpose : Get the number of letters in the queried database. \& Returns : Integer \& Argument : n/a .Ve .SS "entries" .IX Subsection "entries" .Vb 4 \& Usage : $num_entries = $db\->entries(); \& Purpose : Get the number of entries in the queried database. \& Returns : Integer \& Argument : n/a .Ve