|Bio::Location::AvWithinCoordPolicy(3pm)||User Contributed Perl Documentation||Bio::Location::AvWithinCoordPolicy(3pm)|
Bio::Location::AvWithinCoordPolicy - class implementing Bio::Location::CoordinatePolicy as the average for WITHIN and the widest possible and reasonable range otherwise
CoordinatePolicyI implementing objects are used by Bio::LocationI implementing objects to determine integer-valued coordinates when asked for it.
This class will compute the coordinates such that for fuzzy locations of type WITHIN and BETWEEN the average of the two limits will be returned, and for all other locations it will return the widest possible range, but by using some common sense. This means that e.g. locations like "<5..100" (start before position 5) will return 5 as start (returned values have to be positive integers).
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AUTHOR - Hilmar Lapp, Jason Stajich¶
Email <hlapp-at-gmx-dot-net>, <jason-at-bioperl-dot-org>
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
Title : start Usage : $start = $policy->start($location); Function: Get the integer-valued start coordinate of the given location as computed by this computation policy. Returns : A positive integer number. Args : A Bio::LocationI implementing object.
Title : end Usage : $end = $policy->end($location); Function: Get the integer-valued end coordinate of the given location as computed by this computation policy. Returns : A positive integer number. Args : A Bio::LocationI implementing object.