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.\" ========================================================================
.\"
.IX Title "Bio::DB::HTS::Target 3pm"
.TH Bio::DB::HTS::Target 3pm "2020-11-09" "perl v5.32.0" "User Contributed Perl Documentation"
.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
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.SH "LICENSE"
.IX Header "LICENSE"
Copyright [2015\-2018] EMBL-European Bioinformatics Institute
.PP
Licensed under the Apache License, Version 2.0 (the \*(L"License\*(R");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
.PP
.Vb 1
\&     http://www.apache.org/licenses/LICENSE\-2.0
.Ve
.PP
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an \*(L"\s-1AS IS\*(R" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,\s0 either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
.SH "NAME"
Bio::DB::HTS::Target \-\- Object representing the query portion of a BAM/SAM alignment in NATIVE alignment
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
This is identical to Bio::DB::HTS::Query, except that the dna, qscores
and start and end positions are all given in the orientation in which
the read was sequenced, not in the oreintation in which it was
aligned.
.SH "AUTHOR"
.IX Header "AUTHOR"
Rishi Nag <rishi@ebi.ac.uk<gt>