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.\"
.IX Title "Bio::DB::HTS::Tabix::Iterator 3pm"
.TH Bio::DB::HTS::Tabix::Iterator 3pm "2020-11-09" "perl v5.32.0" "User Contributed Perl Documentation"
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.SH "LICENSE"
.IX Header "LICENSE"
Copyright [2015\-2018] EMBL-European Bioinformatics Institute
.PP
Licensed under the Apache License, Version 2.0 (the \*(L"License\*(R");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
.PP
.Vb 1
\&     http://www.apache.org/licenses/LICENSE\-2.0
.Ve
.PP
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an \*(L"\s-1AS IS\*(R" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND,\s0 either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
.SH "NAME"
Bio::DB::HTS::Tabix::Iterator \- XS module wrapping around a tabix hts_itr_t
.SH "SYNOPSIS"
.IX Header "SYNOPSIS"
You shouldn't be instantiating one of these manually it needs a load of pointers.
Usage would be through Bio::DB::HTS::Tabix:
.PP
.Vb 2
\&    use feature qw( say );
\&    use Bio::DB::HTS::Tabix;
\&
\&    my $tabix = Bio::DB::HTS::Tabix\->new( filename => "gerp_plus_plus_31July2014.gz" );
\&
\&    say $tabix\->header;
\&    my $iter = $tabix\->query("1:4000005\-4000009");
\&
\&    while ( my $n = $iter\->next ) {
\&        say $n;
\&    }
.Ve
.SH "DESCRIPTION"
.IX Header "DESCRIPTION"
This is returned from Bio::DB::HTS::Tabix, the only method you need to care about is 'next'.
.PP
Don't go importing this and calling new on it if you value your sanity, it won't work.
.SS "Methods"
.IX Subsection "Methods"
.ie n .IP """next""" 12
.el .IP "\f(CWnext\fR" 12
.IX Item "next"
Returns a string with the line from the tabix iterator
.SH "AUTHOR"
.IX Header "AUTHOR"
Alex Hodgkins
Rishi Nag <rishi@ebi.ac.uk>