Scroll to navigation

PLOT_RES(1) User Commands PLOT_RES(1)


plot_res - determine features of organisms, clades, taxonomic units, genes


plot_res [-h] [--feature_font_size FEATURE_FONT_SIZE] [--format {png,svg,pdf}] [--dpi DPI] [--title TITLE] [--title_font_size TITLE_FONT_SIZE] [--class_legend_font_size CLASS_LEGEND_FONT_SIZE] [--width WIDTH] [--height HEIGHT] [--left_space LS] [--right_space RS] [--orientation {h,v}] [--autoscale {0,1}] [--background_color {k,w}] [--subclades N_SCL] [--max_feature_len MAX_FEATURE_LEN] [--all_feats ALL_FEATS] [--otu_only] [--report_features] INPUT_FILE OUTPUT_FILE


Plot results


positional arguments:

tab delimited input file
the file for the output image

optional arguments:

show this help message and exit
the file for the output image
the format for the output file

--dpi DPI

--title TITLE

--title_font_size TITLE_FONT_SIZE

--class_legend_font_size CLASS_LEGEND_FONT_SIZE

--width WIDTH

only for vertical histograms

--left_space LS

--right_space RS

--orientation {h,v}

--autoscale {0,1}

set the color of the background
number of label levels to be displayed (starting from the leaves, -1 means all the levels, 1 is default )
Maximum length of feature strings (def 60)

--all_feats ALL_FEATS

Plot only species resolved OTUs (as opposed to all levels)
Report important features to STDOUT


This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.

September 2019 plot_res 1.0.8