.TH LAMBDA2 1 "Dec  7 2020" "lambda2 2.0.0" ""
.SH NAME
lambda2 \- Lambda, the Local Aligner for Massive Biological DataA
.SH SYNOPSIS
\fBlambda2\fP [\fIOPTIONS\fP] COMMAND [\fICOMMAND-OPTIONS\fP]
.SH DESCRIPTION
Lambda is a local aligner optimized for many query sequences and searches in protein space. It is compatible to BLAST, but much faster than BLAST and many other comparable tools.
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Detailed information is available in the wiki: <https://github.com/seqan/lambda/wiki>
.SH REQUIRED ARGUMENTS
.TP
\fBCOMMAND\fP \fISTRING\fP
The sub-program to execute. See below. One of \fIsearchp\fP, \fIsearchn\fP, \fImkindexp\fP, and \fImkindexn\fP.
.SH OPTIONS
.TP
\fB-h\fP, \fB--help\fP
Display the help message.
.TP
\fB--version-check\fP \fIBOOL\fP
Turn this option off to disable version update notifications of the application.  One of \fI1\fP, \fION\fP, \fITRUE\fP, \fIT\fP, \fIYES\fP, \fI0\fP, \fIOFF\fP, \fIFALSE\fP, \fIF\fP, and \fINO\fP. Default: \fI1\fP.
.TP
\fB--version\fP
Display version information.
.TP
\fB--copyright\fP
Display long copyright information.
.SH AVAILABLE COMMANDS
\fBsearchp  \fP– Perform a protein search (BLASTP, BLASTX, TBLASTN, TBLASTX).
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\fBsearchn  \fP– Perform a nucleotide search (BLASTN, MEGABLAST).
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\fBmkindexp \fP– Create an index for protein searches.
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\fBmkindexn \fP– Create an index for nucleotide searches.
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To view the help page for a specific command, simply run 'lambda command --help'.
.SH LEGAL
\fBlambda2 Copyright:\fR 2013-2019 Hannes Hauswedell, released under the GNU AGPL v3 (or later); 2016-2019 Knut Reinert and Freie Universität Berlin, released under the 3-clause-BSDL
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\fBSeqAn Copyright:\fR 2006-2015 Knut Reinert, FU-Berlin; released under the 3-clause BSDL.
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\fBIn your academic works please cite:\fR Hauswedell et al (2014); doi: 10.1093/bioinformatics/btu439
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For full copyright and/or warranty information see \fB--copyright\fR.