.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.12.
.TH TIMESCOREALN "1" "August 2020" "timescorealn 3.2.3" "User Commands"
.SH NAME
timescorealn \- Global and progressive multiple sequence alignment
.SH SYNOPSIS
.B timescorealn-avx2
[\fI\,-options\/\fR]   \fI\,-test <test sequences> -ref <reference alignment> -program <kalign|clustalo|muscle> -o <outfile>\/\fR
.SH DESCRIPTION
[2020\-08\-04 21:41:11] :   ERROR : No test file
.IP
(time_and_score_aln.c line 111)
.PP
NOTE: the program appends results to the output file.
.SH OPTIONS
.TP
\fB\-\-scratch\fR
: Scratch directory. [NA]
.PP
Usage: timescorealn\-avx2 [\-options]   \fB\-test\fR <test sequences> \fB\-ref\fR <reference alignment> \fB\-program\fR <kalign|clustalo|muscle> \fB\-o\fR <outfile>
.PP
NOTE: the program appends results to the output file.
.TP
\fB\-\-scratch\fR
: Scratch directory. [NA]
.PP
[2020\-08\-04 21:41:11] : WARNING : Something went wrong. Use this program like this:
.IP
(time_and_score_aln.c line 154)
.PP
Usage: timescorealn\-avx2 [\-options]   \fB\-test\fR <test sequences> \fB\-ref\fR <reference alignment> \fB\-program\fR <kalign|clustalo|muscle> \fB\-o\fR <outfile>
.PP
NOTE: the program appends results to the output file.
.TP
\fB\-\-scratch\fR
: Scratch directory. [NA]
.SH AUTHOR
 This manpage was written by Nilesh Patra for the Debian distribution and
 can be used for any other usage of the program.