.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.16.
.TH HTS-NIM-TOOLS "1" "November 2020" "hts-nim-tools " "User Commands"
.SH NAME
hts-nim-tools \- manual page for hts-nim-tools 
.SH DESCRIPTION
hts\-nim utility programs.
version: 0.2.0
.TP
??? bam\-filter
: filter BAM/CRAM/SAM files with a simple expression language
.IP
??? copy\-number\-sampler : sample BAM regions with a probability given in a BED file (for creating CN truth\-sets)
??? count\-reads         : count BAM/CRAM reads in regions given in a BED file
??? vcf\-check           : check regions of a VCF against a background for missing chunks
.PP
hts\-nim utility programs.
version: 0.2.0
.TP
??? bam\-filter
: filter BAM/CRAM/SAM files with a simple expression language
.IP
??? copy\-number\-sampler : sample BAM regions with a probability given in a BED file (for creating CN truth\-sets)
??? count\-reads         : count BAM/CRAM reads in regions given in a BED file
??? vcf\-check           : check regions of a VCF against a background for missing chunks