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HINGE(1) HINGE(1)

NAME

hinge - assembler for long-read sequencing data

SYNOPSIS

hinge {subcommand} options files

OPTIONS

Subcommands are described below. Run each subcommand without arguments for usage information.

filter out short reads and long chimeric reads.
get maximal reads.
generate a layout for assembly
prune and clip output of the layout command
get assembly graph as list of nodes
construct draft assembly
convert fasta file to daligner-specific format
construct consensus sequence
Create a graphical fragment assembly file from consensus output

visualize, visualise

October 2016