.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.11.
.TH HILIVE-BUILD "1" "October 2019" "hilive-build 2.0a" "User Commands"
.SH NAME
hilive-build \- Index creation tool for HiLive - Realtime Alignment of Illumina Reads
.SH SYNOPSIS
.B hilive\-build
[options]
.SH OPTIONS
.SS "GENERAL OPTIONS:"
.TP
\fB\-h\fR [ \fB\-\-help\fR ]
Print this help message and exit
.TP
\fB\-l\fR [ \fB\-\-license\fR ]
Print licensing information and exit
.SS "REQUIRED OPTIONS:"
.TP
\fB\-i\fR [ \fB\-\-input\fR ] arg
Reference genome(s) in (multi\-)FASTA format.
[REQUIRED]
.TP
\fB\-o\fR [ \fB\-\-out\-prefix\fR ] arg
Output file prefix. Several files with the same
prefix will be created. [REQUIRED]
.SS "OTHER OPTIONS:"
.TP
\fB\-\-do\-not\-convert\-spaces\fR
Do not convert all spaces in reference ids to
underscores [Default: converting is on]
.TP
\fB\-\-trim\-after\-space\fR
Trim all reference ids after first space [Default: false]
.SH EXAMPLE
hilive\-build \fB\-\-input\fR hg19.fa \fB\-\-out\-prefix\fR ./index/hg19
.SH AUTHOR
This manpage was written by Andreas Tille for the Debian distribution and can be used for any other usage of the program.