.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.16.
.TH GSORT "1" "November 2020" "gsort 0.1.4" "User Commands"
.SH NAME
gsort \- sort genomic data
.SH SYNOPSIS
.B gsort
[\fI\,--chromosomemappings CHROMOSOMEMAPPINGS\/\fR] [\fI\,--memory MEMORY\/\fR] [\fI\,--parent\/\fR] \fI\,PATH GENOME\/\fR
.SH DESCRIPTION
.SS "Positional arguments:"
.TP
PATH
a tab\-delimited file to sort
.TP
GENOME
a genome file of chromosome sizes and order
.SH OPTIONS
.TP
\fB\-\-chromosomemappings\fR CHROMOSOMEMAPPINGS, \fB\-c\fR CHROMOSOMEMAPPINGS
a file used to re\-map chromosome names for example from hg19 to GRCh37
.TP
\fB\-\-memory\fR MEMORY, \fB\-m\fR MEMORY
megabytes of memory to use before writing to temp files. [default: 2800]
.TP
\fB\-\-parent\fR, \fB\-p\fR
for gff only. given rows with same chrom and start put those with a 'Parent' attribute first
.TP
\fB\-\-help\fR, \fB\-h\fR
display this help and exit
.SH AUTHOR
 This manpage was written by Nilesh Patra for the Debian distribution and
 can be used for any other usage of the program.