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GT-SEQSTAT(1) GenomeTools Manual GT-SEQSTAT(1)


gt-seqstat - Calculate statistics for fasta file(s).


gt seqstat [options] file [...]


-v [yes|no]

be verbose (default: no)

-distlen [yes|no]

show distribution of sequence length (default: no)

-b [value]

bucket size for distlen option (default: 100)

-binary [yes|no]

use a binary format for distlen output output filename: <first_input_filename>.distlen bucketsize: 1 (default: no)

-contigs [yes|no]

summary of contigs set statistics (default: yes)


list of N-values to calculate statistics for, terminated by --; if none given, N50 and N80 will be calculated

-astretch [yes|no]

show distribution of A-substrings (default: no)

-genome [value]

set genome length for NG50/NG80 calculation (default: 0)


display help for basic options and exit


display help for all options and exit


display version information and exit


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07/22/2020 GenomeTools 1.6.1