'\" t
.\"     Title: gt-seqstat
.\"    Author: [FIXME: author] [see http://www.docbook.org/tdg5/en/html/author]
.\" Generator: DocBook XSL Stylesheets vsnapshot <http://docbook.sf.net/>
.\"      Date: 07/22/2020
.\"    Manual: GenomeTools Manual
.\"    Source: GenomeTools 1.6.1
.\"  Language: English
.\"
.TH "GT\-SEQSTAT" "1" "07/22/2020" "GenomeTools 1\&.6\&.1" "GenomeTools Manual"
.\" -----------------------------------------------------------------
.\" * Define some portability stuff
.\" -----------------------------------------------------------------
.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
.\" http://bugs.debian.org/507673
.\" http://lists.gnu.org/archive/html/groff/2009-02/msg00013.html
.\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
.ie \n(.g .ds Aq \(aq
.el       .ds Aq '
.\" -----------------------------------------------------------------
.\" * set default formatting
.\" -----------------------------------------------------------------
.\" disable hyphenation
.nh
.\" disable justification (adjust text to left margin only)
.ad l
.\" -----------------------------------------------------------------
.\" * MAIN CONTENT STARTS HERE *
.\" -----------------------------------------------------------------
.SH "NAME"
gt-seqstat \- Calculate statistics for fasta file(s)\&.
.SH "SYNOPSIS"
.sp
\fBgt seqstat\fR [options] file [\&...]
.SH "DESCRIPTION"
.PP
\fB\-v\fR [\fIyes|no\fR]
.RS 4
be verbose (default: no)
.RE
.PP
\fB\-distlen\fR [\fIyes|no\fR]
.RS 4
show distribution of sequence length (default: no)
.RE
.PP
\fB\-b\fR [\fIvalue\fR]
.RS 4
bucket size for distlen option (default: 100)
.RE
.PP
\fB\-binary\fR [\fIyes|no\fR]
.RS 4
use a binary format for distlen output output filename: <first_input_filename>\&.distlen bucketsize: 1 (default: no)
.RE
.PP
\fB\-contigs\fR [\fIyes|no\fR]
.RS 4
summary of contigs set statistics (default: yes)
.RE
.PP
\fB\-nstats\fR
.RS 4
list of N\-values to calculate statistics for, terminated by
\fI\-\-\fR; if none given, N50 and N80 will be calculated
.RE
.PP
\fB\-astretch\fR [\fIyes|no\fR]
.RS 4
show distribution of A\-substrings (default: no)
.RE
.PP
\fB\-genome\fR [\fIvalue\fR]
.RS 4
set genome length for NG50/NG80 calculation (default: 0)
.RE
.PP
\fB\-help\fR
.RS 4
display help for basic options and exit
.RE
.PP
\fB\-help+\fR
.RS 4
display help for all options and exit
.RE
.PP
\fB\-version\fR
.RS 4
display version information and exit
.RE
.SH "REPORTING BUGS"
.sp
Report bugs to https://github\&.com/genometools/genometools/issues\&.