'\" t
.\"     Title: gt-matstat
.\"    Author: [FIXME: author] [see http://www.docbook.org/tdg5/en/html/author]
.\" Generator: DocBook XSL Stylesheets vsnapshot <http://docbook.sf.net/>
.\"      Date: 07/22/2020
.\"    Manual: GenomeTools Manual
.\"    Source: GenomeTools 1.6.1
.\"  Language: English
.\"
.TH "GT\-MATSTAT" "1" "07/22/2020" "GenomeTools 1\&.6\&.1" "GenomeTools Manual"
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.SH "NAME"
gt-matstat \- Compute matching statistics\&.
.SH "SYNOPSIS"
.sp
\fBgt matstat\fR [options \&...] \-query queryfile [\&...]
.SH "DESCRIPTION"
.PP
\fB\-fmi\fR [\fIstring\fR]
.RS 4
specify fmindex (default: undefined)
.RE
.PP
\fB\-esa\fR [\fIstring\fR]
.RS 4
specify suffix array (default: undefined)
.RE
.PP
\fB\-pck\fR [\fIstring\fR]
.RS 4
specify packed index (default: undefined)
.RE
.PP
\fB\-query\fR
.RS 4
specify queryfiles
.RE
.PP
\fB\-min\fR [\fIvalue\fR]
.RS 4
only output length if >= given minimum length (default: 0)
.RE
.PP
\fB\-max\fR [\fIvalue\fR]
.RS 4
only output length if ⇐ given maximum length (default: 0)
.RE
.PP
\fB\-output\fR
.RS 4
set output flags (sequence, querypos, subjectpos)
.RE
.PP
\fB\-help\fR
.RS 4
display help and exit
.RE
.PP
\fB\-version\fR
.RS 4
display version information and exit
.RE
.SH "ADDITIONAL INFORMATION"
.sp
For detailed information, please refer to the manual of matstat\&.
.SH "REPORTING BUGS"
.sp
Report bugs to <kurtz@zbh\&.uni\-hamburg\&.de>\&.