'\" t
.\"     Title: gt-encseq-sample
.\"    Author: [FIXME: author] [see http://www.docbook.org/tdg5/en/html/author]
.\" Generator: DocBook XSL Stylesheets vsnapshot <http://docbook.sf.net/>
.\"      Date: 07/22/2020
.\"    Manual: GenomeTools Manual
.\"    Source: GenomeTools 1.6.1
.\"  Language: English
.\"
.TH "GT\-ENCSEQ\-SAMPLE" "1" "07/22/2020" "GenomeTools 1\&.6\&.1" "GenomeTools Manual"
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.SH "NAME"
gt-encseq-sample \- Decode/extract encoded sequences by random choice\&.
.SH "SYNOPSIS"
.sp
\fBgt encseq sample\fR (sequence_file|indexname)
.SH "DESCRIPTION"
.PP
\fB\-mirrored\fR [\fIyes|no\fR]
.RS 4
virtually append the reverse complement of each sequence (default: no)
.RE
.PP
\fB\-lossless\fR [\fIyes|no\fR]
.RS 4
allow lossless original sequence retrieval (default: no)
.RE
.PP
\fB\-dir\fR [\fIstring\fR]
.RS 4
specify reading direction (fwd, cpl, rev, rcl) (default: fwd)
.RE
.PP
\fB\-singlechars\fR [\fIyes|no\fR]
.RS 4
do not use a GtEncseqReader but access each sequence character separately (default: no)
.RE
.PP
\fB\-length\fR [\fIvalue\fR]
.RS 4
minimum length to be extracted (default: undefined)
.RE
.PP
\fB\-seqrange\fR [\fIstart\fR \fIend\fR]
.RS 4
extract multiple consecutive sequences (default: undefined)
.RE
.PP
\fB\-output\fR [\fI\&...\fR]
.RS 4
specify output format (choose from fasta|concat) (default: fasta)
.RE
.PP
\fB\-sepchar\fR [\fIstring\fR]
.RS 4
specify character to print as GT_SEPARATOR (default: |)
.RE
.PP
\fB\-help\fR
.RS 4
display help for basic options and exit
.RE
.PP
\fB\-help+\fR
.RS 4
display help for all options and exit
.RE
.PP
\fB\-version\fR
.RS 4
display version information and exit
.RE
.SH "REPORTING BUGS"
.sp
Report bugs to https://github\&.com/genometools/genometools/issues\&.