'\" t
.\"     Title: gt-compreads-decompress
.\"    Author: [FIXME: author] [see http://www.docbook.org/tdg5/en/html/author]
.\" Generator: DocBook XSL Stylesheets vsnapshot <http://docbook.sf.net/>
.\"      Date: 07/22/2020
.\"    Manual: GenomeTools Manual
.\"    Source: GenomeTools 1.6.1
.\"  Language: English
.\"
.TH "GT\-COMPREADS\-DECOM" "1" "07/22/2020" "GenomeTools 1\&.6\&.1" "GenomeTools Manual"
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.SH "NAME"
gt-compreads-decompress \- Decodes a file of compressed reads\&.
.SH "SYNOPSIS"
.sp
\fBgt compreads decompress\fR [option \&...] (\-file file)
.SH "DESCRIPTION"
.PP
\fB\-v\fR [\fIyes|no\fR]
.RS 4
be verbose (default: no)
.RE
.PP
\fB\-descs\fR [\fIyes|no\fR]
.RS 4
enable description decoding (default: no)
.RE
.PP
\fB\-file\fR [\fIstring\fR]
.RS 4
specify base name of files containing HCR\&. (default: undefined)
.RE
.PP
\fB\-name\fR [\fIstring\fR]
.RS 4
specify base name for decoded hcr (suffix will be "\&.fastq") (default: undefined)
.RE
.PP
\fB\-smap\fR [\fIstring\fR]
.RS 4
specify file containing alphabetdescription (file must be an \&.al1 file)\&. If "\-smap" is not set, dna alphabet is used\&. (default: undefined)
.RE
.PP
\fB\-range\fR [\fIstart\fR \fIend\fR]
.RS 4
decode multiple consecutive reads\&. If range is not specified, the entire file will be decoded\&. (default: undefined)
.RE
.PP
\fB\-width\fR [\fIvalue\fR]
.RS 4
set width of output, 0 disables formatting\&. line breaks in quality strings can cause problems with parsers, use with care (default: 0)
.RE
.PP
\fB\-help\fR
.RS 4
display help and exit
.RE
.PP
\fB\-version\fR
.RS 4
display version information and exit
.RE
.SH "REPORTING BUGS"
.sp
Report bugs to https://github\&.com/genometools/genometools/issues\&.