'\" t
.\"     Title: gt-compreads-compress
.\"    Author: [FIXME: author] [see http://www.docbook.org/tdg5/en/html/author]
.\" Generator: DocBook XSL Stylesheets vsnapshot <http://docbook.sf.net/>
.\"      Date: 07/22/2020
.\"    Manual: GenomeTools Manual
.\"    Source: GenomeTools 1.6.1
.\"  Language: English
.\"
.TH "GT\-COMPREADS\-COMPR" "1" "07/22/2020" "GenomeTools 1\&.6\&.1" "GenomeTools Manual"
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.SH "NAME"
gt-compreads-compress \- Generates compact encoding for fastq data\&.
.SH "SYNOPSIS"
.sp
\fBgt compreads compress\fR [option \&...] (\-files file [\&...])
.SH "DESCRIPTION"
.PP
\fB\-descs\fR [\fIyes|no\fR]
.RS 4
encode descriptions (default: no)
.RE
.PP
\fB\-files\fR
.RS 4
File(s) containing reads\&.
.RE
.PP
\fB\-name\fR [\fIstring\fR]
.RS 4
specify base name for HCR to be generated\&. Only mandatory, if more than one file was given\&. (default: undefined)
.RE
.PP
\fB\-smap\fR [\fIstring\fR]
.RS 4
file containing alphabet description\&. If "\-smap" is not set, dna alphabet is used\&. (default: undefined)
.RE
.PP
\fB\-qrange\fR [\fIstart\fR \fIend\fR]
.RS 4
specify range of quality values\&. All values smaller or equal to the lower bound will be converted to the lower bound\&. All values equal or larger than the upper bound will be converted to the upper bound\&. (default: undefined)
.RE
.PP
\fB\-srate\fR [\fIvalue\fR]
.RS 4
sampling rate, set to sensible default depending on sampling method (default: undefined)
.RE
.PP
\fB\-stype\fR [\fI\&...\fR]
.RS 4
type of sampling one of regular \- page \- none (default: page)
.RE
.PP
\fB\-help\fR
.RS 4
display help and exit
.RE
.PP
\fB\-version\fR
.RS 4
display version information and exit
.RE
.SH "REPORTING BUGS"
.sp
Report bugs to https://github\&.com/genometools/genometools/issues\&.